With the improvement of China's public finance system, the state has higher and higher requirements for accounting of administrative institutions. In order to promote the healthy development of higher education and strengthen the financial management and supervision of colleges and universities, colleges and universities have gradually upgraded their software, used and promoted the online reimbursement module. This new reimbursement model has rapidly spread among colleges and universities. This paper analyzes the problems existing in the online reimbursement of colleges and universities, and gives corresponding solutions, with a view to promoting the informatization construction of colleges and universities, improving the financial management level of colleges and universities, and bringing better reimbursement experience to the teaching staff.